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Traph

Traph RNA-seq abundance estimator from Veli Mäkinen lab

Version 0.1
Bundle sequencing
Categories External
Authors Lauri Lyly (lauri.lyly@helsinki.fi)
Issue tracker View/Report issues
Requires bash
Source files component.xml main.bash
Usage Example with default values

Inputs

Name Type Mandatory Description
fragments BinaryFile Mandatory Aligned fragments, e.g. TopHat output

Outputs

Name Type Description
folder BinaryFolder Contains a GTF file. Should presumably instead produce a GTF file as output.

Parameters

Name Type Default Description
options string "" Any other flags to pass to the runtraph.py command.
readLength int (no default) Read length. Should work even if it is wrong, but results are going to be wrong as well.

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