Up: Component summary Component


Projects a grayscale z-stack to a 2D image. Use method parameter to choose the algorithm to use. Stack projection mapping is only valid for methods that pick an actual value from the stack (max,min)

Version 1.0
Bundle anima
Categories Image Processing
Authors Ville Rantanen (ville.rantanen@helsinki.fi)
Issue tracker View/Report issues
Requires Matlab
Source files component.xml mapstack.m stackprojection.m
Usage Example with default values


Name Type Mandatory Description
in ImageList Mandatory Folder with images (e.g. tif). The whole folder is understood as one stack. Use BFConvert to extract. Z-indexes may need to be padded with
toMap Array<ImageList> Optional An array of directories with stacks. these stacks are projected with the same Z-indexes as found in the in port.


Name Type Description
out ImageList Projected image.
map ImageList Map of Z-indexes used.
mapped Array<ImageList> toMap projected with the map calculated for in.


Name Type Default Description
blur int 0 Blur index map before projection. Select Gaussian blur sigma.
dilate int 0 Dilate each z-slice before projection. Select disc radius.
method string "maximum" Projection method. maximum,mean,median,sd,minimum.

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