Up: Component summary Component

PlotChannels

Component meant to visualize Flow and Mass Cytometry data before and after transformations.

Version 1.0
Bundle flowand
Categories FlowCytometry
Authors Julia Casado (julia.casado@helsinki.fi)
Requires R ; flowCore (R-bioconductor)
Source files component.xml PlotChannels.r
Usage Example with default values

Inputs

Name Type Mandatory Description
in CSV Mandatory Array of FCS files
fs flowSet Mandatory Array of FCS files

Outputs

Name Type Description
out BinaryFolder Folder that contains the plots generated from the data.

Parameters

Name Type Default Description
dim1 string "*" Channels to use as first dimension in plots.
dim2 string "*" Channels to use as second dimension in plots. All the channels from dim2 will be plotted against the channels in the dim1 parameter.

Test cases

Test case Parameters IN
in
IN
fs
OUT
out
case1 (missing) (missing) (missing) (missing)

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