Up: Component summary Component

MicroplateReader

Reads multiple XLSX files generated by a fluorescence/luminescence reader for a 96 or 384 well plate and converts it into a tab-delimitted CSV file with the correct annotations for each well. See test cases for examples of input format.

Version 1.0
Bundle dsrt
Categories Data Import Preprocessing Excel
Authors Julia Casado (julia.casado@helsinki.fi)
Requires R ; xlsx (R-package)
Source files component.xml MicroplateReader.r
Usage Example with default values

Inputs

Name Type Mandatory Description
in BinaryFolder Mandatory Folder of XLSX files generated by the plate reader.
annotations Excel Mandatory One XLSX file that contains the layout of the plate with annotations of what each well contains, each sheet can contain different sets of annotations, it will transform into column names of the output file.

Outputs

Name Type Description
out Array<CSV> Array of CSV with the measurements from each plate.

Test cases

Test case Parameters IN
in
IN
annotations
OUT
out
case1 (missing) in annotations out

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