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MarkerCorrelations

Combines correlating markers from the SNPMatrices. Only consecutive markers are considered to be correlating and the correlation is defined as (AA = BB) and (Aa = Bb) and (aa = bb) for all samples.

This component assumes that the markers are in the sequence order!

Version 1.1
Bundle microarray
Categories Filter SNP
Authors Marko Laakso (Marko.Laakso@Helsinki.FI)
Issue tracker View/Report issues
Requires microarray.jar (jar)
Source files component.xml
Usage Example with default values

Inputs

Name Type Mandatory Description
genotypes SNPMatrix Mandatory SNPHelistin genotype output

Outputs

Name Type Description
markerGroups SetList A table of correlating markers
keyMarkers IDList A list of input markers where each set of correlating markers is replaced with one member of the set.

Test cases

Test case Parameters IN
genotypes
OUT
markerGroups
OUT
keyMarkers
case1 (missing) genotypes markerGroups keyMarkers

Generated 2018-12-18 07:42:22 by Anduril 2.0.0