Up: Component summary Component

MRXSConvert

Exports MRXS images in to PNGs, cropping them to small images.

Version 1.1
Bundle anima
Categories Image Processing
Authors Ville Rantanen (ville.rantanen@helsinki.fi)
Issue tracker View/Report issues
Requires bash ; python-openslide (DEB)
Source files component.xml mrxsconv.sh
Usage Example with default values

Inputs

Name Type Mandatory Description
in BinaryFolder Mandatory Input folder for MRXS images. Folder has one subfolder for each dataset, and a .mrxs file with the same basename.

Outputs

Name Type Description
out Array<ImageList> Output folders of converted images.
label Array<ImageList> Output folders of label images.

Parameters

Name Type Default Description
level int 1 Image scaling: 0=original, 1=half, 2=quarter...
transparent boolean false Empty pixels set transparent. If false, pixels are white.
width int 1250 Width (and height) of each output image.
writeAll boolean false Write images without any content.

Generated 2018-12-17 07:42:16 by Anduril 2.0.0