Up: Component summary Component

ISABiclust

Does Biclustering using iterative signature algorithm-package.

Version 1.0
Bundle tools
Categories Clustering
Authors Oskari Lehtonen (oskari.lehtonen@helsinki.fi)
Issue tracker View/Report issues
Requires isa2 (R-package)
Source files component.xml ISABclust.r
Usage Example with default values

Inputs

Name Type Mandatory Description
in CSV Mandatory Input data, tab separated file. Numeric with column and rownames

Outputs

Name Type Description
labels CSV Matrix of class labels. Zero mean, no membership
rowClusters CSV Membership probability for each row in the input data
colClusters CSV Membership probability for each column in the input data

Parameters

Name Type Default Description
thrLow float 0 Lower threshold value for clusters. In units of standard deviation.
thrStep float 0.5 Threshold step size
thrUp float 1.5 Upper threshold value for clusters. In units of standard deviation.

Test cases

Test case Parameters IN
in
OUT
labels
OUT
rowClusters
OUT
colClusters
case1 (missing) in labels rowClusters colClusters

Generated 2018-12-12 07:42:06 by Anduril 2.0.0