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FASTA2CSV

Converts a FASTA file to CSV.

Version 1.0
Bundle sequencing
Categories Convert
Authors Ping Chen (Ping.Chen@Helsinki.FI)
Issue tracker View/Report issues
Source files component.xml FASTA2CSV.pl
Usage Example with default values

Inputs

Name Type Mandatory Description
in FASTA Mandatory FASTA sequences

Outputs

Name Type Description
out CSV Converted CSV file with identifiers as 1st column and sequences as 2nd column.

Parameters

Name Type Default Description
idCol string "id" Name of the identifier column of the output file.
seqCol string "seq" Name of the sequence column of the output file

Test cases

Test case Parameters IN
in
OUT
out
case1 (missing) in out

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