Up: Component summary Function

EnsemblGenes

Retrieves the Ensembl gene locations. The organism is given in the connection input where the query database is defined. Currently human and mouse databases are supported.

Version 1.0
Bundle sequencing
Categories Annotation
Authors Ping Chen (ping.chen@helsinki.fi)
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Source files component.xml function.scala
Usage Example with default values

Inputs

Name Type Mandatory Description
connection Properties Mandatory Ensembl database connection configuration file.

Outputs

Name Type Description
codingGene DNARegion Ensembl coding gene locations.
otherGene DNARegion Non-coding Ensembl gene locations.

Test cases

Test case Parameters IN
connection
OUT
codingGene
OUT
otherGene
case1 (missing) connection codingGene otherGene

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