Up: Component summary Function

EnsemblChromosomes

Retrieves the Ensembl names and lengths of chromosomes. The organism is given in the connection input where the query database is defined. Currently human and mouse databases are supported.

Version 1.0
Bundle sequencing
Categories Annotation
Authors Riku Louhimo (Riku.Louhimo@Helsinki.FI)
Issue tracker View/Report issues
Source files component.xml function.scala
Usage Example with default values

Inputs

Name Type Mandatory Description
connection Properties Mandatory Ensembl database connection configuration file.

Outputs

Name Type Description
chromosomes CSV Ensembl default chromosome names and sizes.
extraChr CSV All non-default (non-canonical) chromosomes from Ensembl.

Test cases

Test case Parameters IN
connection
OUT
chromosomes
OUT
extraChr
case1 (missing) connection chromosomes extraChr
case2_mus (missing) connection chromosomes (missing)

Generated 2018-12-12 07:42:06 by Anduril 2.0.0