Up: Component summary Component

ClusterChooser

Graphical tool for cluster population selection.

Version 1.0
Bundle flowand
Categories FACSClustering FlowCytometry
Authors Ping Chen (ping.chen@helsinki.fi)
Requires flowGraph.jar (jar)
Source files component.xml ClusterChooser.java
Usage Example with default values

Inputs

Name Type Mandatory Description
population CSVList Mandatory Automatically gated cell populations.
plots Latex Mandatory Plots of clusters.
sampleAnnotation CSV Mandatory Sample annotation file.

Outputs

Name Type Description
corrected CSVList Corrected cell populations.
fileStatus CSV File status file ('Accept' or 'Fail').

Parameters

Name Type Default Description
annoColumn string "PatientID" The name of column which contains file annotations.
fileColumn string "Filename" The name of column which contains csv filenames.

Test cases

Test case Parameters IN
population
IN
plots
IN
sampleAnnotation
OUT
corrected
OUT
fileStatus
case1 properties population plots sampleAnnotation corrected fileStatus

metadata.timeout=0

case2 properties population plots sampleAnnotation corrected fileStatus

metadata.timeout=0


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