Up: Component summary Component

CSVListFilter

Filters CSV files in a given folder according to the to extract specific rows given output of AutoGating component. The output can be used for further clustering. NOTE: Only works if the input CSVList has 10 files!

Version 1.0
Bundle flowand
Categories FlowCytometry
Authors Anna-Maria Lahesmaa-Korpinen (anna-maria.lahesmaa@helsinki.fi)
Source files component.xml csvlistfilter.sh
Usage Example with default values

Inputs

Name Type Mandatory Description
clusters CSVList Mandatory Folder of unfilered CSV files.
populations CSVList Mandatory  

Outputs

Name Type Description
filtered CSVList Folder with filtered CSV files.
array Array<CSV> Array with filtered CSV files.

Parameters

Name Type Default Description
clusterColumn string "cluster" Column name in "clusters"-files that contains cluster values. If the parameter is empty, the first column is used.
populationName string "Lymphocytes" A string that specifies the population name used for filtering. Same as "ClusterIdentifier" in GatingSummary.

Test cases

Test case Parameters IN
clusters
IN
populations
OUT
filtered
OUT
array
case1 properties clusters populations (missing) (missing)

populationName=CellType1,
clusterColumn=C

case2 properties clusters populations (missing) (missing)

clusterColumn=PrimaryGates


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