Up: Component summary Component

CSV2FASTA

Converts the given comma separated value file to a FASTA file.

Version 1.0
Bundle microarray
Categories Convert
Authors Marko Laakso (Marko.Laakso@Helsinki.FI)
Issue tracker View/Report issues
Requires asser.jar (jar)
Source files component.xml
Usage Example with default values

Inputs

Name Type Mandatory Description
in CSV Mandatory Input relation

Outputs

Name Type Description
out FASTA Extracted sequences

Parameters

Name Type Default Description
idCol string "id" Optional name of the column that contains identifier names for the sequences. Identifiers are generated based on the name of the component instance if this column is not found or if it contains missing values.
seqCol string (no default) Name of the sequence column of the input file

Test cases

Test case Parameters IN
in
OUT
out
case1 properties in out

seqCol=seq

case2 properties in out

seqCol=seq,
idCol=


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