Up: Component summary Component

BFMetadata

Wrapper for the Bioformats command line tool for extracting metadata from exotic image formats.

Version 1.0
Bundle anima
Categories Image Processing
Authors Ville Rantanen (ville.rantanen@helsinki.fi)
Issue tracker View/Report issues
Requires bash ; Bioformats bftools ; installer (bash)
Source files component.xml bfmeta.sh
Usage Example with default values

Inputs

Name Type Mandatory Description
in BinaryFolder Mandatory Input folder of images, any format recognized by Bioformats library.

Outputs

Name Type Description
raw BinaryFolder Folder of text files with metadata. Format may be image format specific.
ome BinaryFolder Folder of XML files with metadata.

Parameters

Name Type Default Description
filter string ".*" Case insensitive filtering of input files with GNU grep (ex. "tif")

Test cases

Test case Parameters IN
in
OUT
raw
OUT
ome
case1 properties in raw ome

metadata.timeout=0


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