Up: Category summary Category

Pathway

Parent category Analysis
Description Pathway databases, SBML tools
Component Version Inputs Outputs Description
GSEAAnalyzer 1.0 annotation, expr, sampleGroupTable report, ResultTable Performs Gene Set Enrichment Analysis by using category definitions from KEGG or GO.
KGML2GraphML 1.0 kgml pathway Converts a KEGG pathway (KGML) to a GraphML file.
ModelicaCompiler 0.5 sourceModel binaryModel, flatModel Compile a Modelica model into binary form using OpenModelica.
ModelicaSimulator 0.5 binaryModel, parameters timepoints Simulate a Modelica model by executing a compiled model.
SBML2GraphML 1.0 model graph Visualizes an SBML model as a GraphML file.
SBML2HTML 1.0 model report Prints the contents of an SBML model as a HTML file.
SBMLSimulator 1.2 in plot, timepoints Simulates an SBML model using SBML ODE Solver.
SBMLTable 1.3 model, species, reactions, parameters, compartments, rules, events, annotations model, species, reactions, parameters, compartments, rules, events, annotations_out Extracts SBML attributes into a CSV file, or imports attributes from a CSV file.
SigPathway 1.0 expr, samplegroup pathways Performs pathway analysis by computing NEk and NTk statistics described in Tian et al (2005).
SPIA 1.1 deg, reference pathways, pathwayGenes Performs pathway analysis using Signaling Pathway Impact Analysis (formerly known as Pathway-Express).
SVDAnalyzer 1.0 annotation, expr, sampleGroupTable report, resultTable Performs Singular Value Decomposition to gene sets to test whether a set of genes is significantly differentially expressed.

Generated 2019-01-14 07:42:05 by Anduril 2.0.0