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Description Latex manipulation and output
Component Version Inputs Outputs Description
BoxPlot 1.3.1 in1, in2, in3, groups, dataPoints out Creates box plots for numeric data.
ClusterReport 1.1 matr report, tree Performs a hierarchical clustering of samples.
CorrelationReport 1.1 matr report, correlation Creates a correlation report that shows how much columns of a numeric matrix correlate with each other.
CSV2Latex 2.3 tabledata, refs report Converts the given comma separated value file to a LaTeX table.
DEGReport 1.1.1 deg, geneAnnotation, expr summary, genelist Creates a LaTeX report on differentially expressed genes (DEGs).
DocumentGenerator 1.1 body1, body2, body3, body4, body5, body6, body7, bibtex, abstractText, appendix document Creates a PDF document from the given LaTeX elements and of the system configuration.
ExperimentSetup 1.2 groups, idlist report, graph Creates a report that displays all sample groups using a table and a graph that visualizes the sample groups and their relations.
GeneCount 1.0 expr1, expr2, expr3, expr4, expr5, expr6, expr7, expr8, geneAnnotation report Produces a LaTeX report that shows the number of genes or features under analysis in various phases of an Anduril script.
GeneInfo 1.0 expr1, expr2, expr3, geneAnnotation, groups report Prints detailed information on single genes.
GeneTable 1.1.1 idlist, expr, geneAnnotation, groups, sampleAnnotation out Compiles gene ID sets into CSV files that contain gene annotations and expression.
IlluminaPlot 1.1 in out Produces quality control plots.
KaplanMeier 2.2 survival, annotation report, statistics, plots Produces a Kaplan-Meier plot representing survival estimates based on the given data.
LatexAttachment 1.0 file1, file2, file3, file4, file5, file6, file7, file8, file9 report Constructs a LaTeX fragment that includes attachments for the given files.
LatexCombiner 1.5 latex1, latex2, latex3, latex4, latex5, latex6, latex7, latex8, latex9, array, resources document Combines several LaTeX fragments into one LaTeX document.
LatexPDF 1.1 in, header, footer out, completeDocument Compiles a LaTeX document into Portable Document Format (PDF).
LatexSearchReplace 1.0 in, rules out Transforms text (including Tex) files in the given Latex directory by replacing certain string with new values in the specified text files.
LatexTemplate 1.4.2 docAbstract, bibtex, bibtex1, bibtex2, bibtex3, bibtex4, bibtex5 header, footer Creates LaTeX header and footer files that are inserted to the beginning and the end of the LaTeX report.
Logo 1.6 motifs, annot, subset report Generates sequence logos for the given DNA motifs.
MatlabEvaluate 1.0 script, table1, table2, table3, table4, table5, var1, var2, var3, var4, var5, var6, var7, var8, var9 table, optOut1, optOut2, optOut3, document Executes a Matlab script that generates a matrix from the given data.
MDSPlot 2.2 expr, groups mdsCoOrdinates, report Plots multidimensional scaling of numeric data.
Plot2D 1.0 y, x, labels, plotAnnotator out Creates scatter, line or bar plots where Y and X coordinates come from CSV files.
Properties2Latex 1.2 props1, props2, props3, props4, props5, props6, props7, props8, props9 report Converts a set of properties files into a LaTeX fragment.
QueryReport 1.2 query, table1, table2, table3, table4, table5, table6, table7, table8, refs report, data Executes an SQL query and prints it with the result table.
RConfigurationReport 1.0 packageList report, citations Generates a report about the versions and the purposes of the selected R packages.
RegionReport 1.1 regions, chromosomes report Generates statistics about the DNA regions.
REvaluate 2.2 script, table1, table2, table3, table4, table5, var1, var2, var3, inArray table, outArray, optOut1, optOut2, optOut3, document Executes an R script that generates a matrix from the given data.
SegmentPlot 1.5 chrSegments plot, SignRegion Plots segmented chromosomal data.
SNPKaplanMeier 1.6.1 genotypes, survival, annotations statistics, report Calculates Kaplan-Meier estimates for genotype specific survival effects.
SourceCode2Latex 1.0 in out Converts the given source code to a LaTeX fragment containing the given listing (lstset).
SpatialPlot 1.4 geneAnnotation, channel1, channel2, logratio report Creates spatial plots for red/green channels, log ratios and spot quality.
SyntaxHighlight 1.1 in HTML, image, latex Reads a program code listing, and creates a syntax highlighted HTML file.

Generated 2019-01-14 07:42:05 by Anduril 2.0.0