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Convert

Parent category Analysis
Description Conversion between data types, CSV set operations
Component Version Inputs Outputs Description
Bam2Counts 0.8 in out Converts Bam files to count matrices summarizing on gene, transcript or exon level.
Bam2Fastq 0.1 in out Revert BAM file to Fastq file for realignment.
CSV2Excel 1.3 csv, csv2, csv3, csv4, csv5, csv6, csv7, csv8, csv9, array, style, refs excelFile Converts a file from CSV format to Excel 97 format.
CSV2FASTA 1.0 in out Converts the given comma separated value file to a FASTA file.
CSV2IDList 1.4 in1, in2, in3, in4, in5, in6, in7, in8, in9, array out Extracts columns from each given CSV file and prints their content out without duplicates.
CSV2JSON 1.0 in out Transforms a CSV file to JSON format.
CSV2Latex 2.3 tabledata, refs report Converts the given comma separated value file to a LaTeX table.
CSV2SetList 1.1 table1, table2, table3, table4, table5, table6, table7, table8, table9, tables lists Extracts identifier columns from the given CSV files and prints them out without duplicates.
CSVCleaner 2.2 in out Cleans up CSV outputs, optionally removes file headers, quotations and unused columns, and can reorder and rename columns.
CSVColRename 0.1 in, reference out Changes column names in a CSV file given a reference file.
CSVJoin 1.1 in1, in2, in3, in4, inDir, in out Joins rows from two or more CSV files from all the inputs, optionally using one column as a matching key.
CSVListJoin 3.2 folder, in, in1, in2, in3, in4 out Combines the content of input files into a single CSV file.
CSVSplit 1.0 in out Divides the content of the given CSV to an array of multiple CSV files.
CSVSplitColumns 0.1 in out Splits CSV into new files according to columns.
EncodeTextFile 0.1 in out Convert general text files from one character encoding to another.
Excel2CSV 1.0 in out Converts a Microsoft Excel sheet to a CSV file.
Excel2Text 0.1 in out Converts an Excel 97 xls-sheet to a text file.
ExpandCollapse 1.4 in out Converts between the two possible representations of a relations with multivalued columns.
ExtensiveCSVJoin 0.1 files, fileDefs join Combines and cleans many files.
FASTA2CSV 1.0 in out Converts a FASTA file to CSV.
FolderExtractor 1.0 folder file1, file2, file3, file4, file5, file6, file7, file8, file9 Extracts files from a folder.
IDConvert 1.0 in, conversionTable out Converts IDs from a column in a CSV file to other type of IDs and/or combines duplicated rows into one.
JCSVJoin 1.0 csv1, csv2, csv3, csv4, csv5, csv6, csv7, csv8, csvDir, array csv Java implementation of R CSVJoin component.
KeywordMatcher 1.0 annotation, query mapping Identifies gene/protein IDs using fuzzy keyword matching between gene aliases and descriptions.
Labels2Columns 1.1 in out Reads columns of data, the unique entries of the label column are transposed as column names.
LatexSearchReplace 1.0 in, rules out Transforms text (including Tex) files in the given Latex directory by replacing certain string with new values in the specified text files.
MatrixTranspose 1.0 in out Transposes a matrix.
Properties2Latex 1.2 props1, props2, props3, props4, props5, props6, props7, props8, props9 report Converts a set of properties files into a LaTeX fragment.
RowJoin 0.5 matrix, thresholds table Joins duplicate id rows from a numeric matrix based on the frequency of some given value.
SearchReplace 1.1 in, rules out Transforms the given file by replacing certain string with new values.
SetTransformer 0.6 transformation, set1, set2, set3, set4, set5 result Transforms sets using union, intersection, difference and other functions.
SourceCode2Latex 1.0 in out Converts the given source code to a LaTeX fragment containing the given listing (lstset).
SyntaxHighlight 1.1 in HTML, image, latex Reads a program code listing, and creates a syntax highlighted HTML file.
TableQuery 1.3 table1, table2, table3, table4, table5, table6, table7, table8, table9, table10, table11, table12, table13, table14, table15, tables, queryFile, columnTypes table Executes an SQL query on CSV tables and creates a result table.
WekaAttributeSelection 1.0 in out Selects parameters using Weka AttributeSelection classes.
WekaTransform 1.3 in out Transforms data using filter classes implemented in Weka.

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