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Parent category Analysis
Description Components that employ clustering based methods
Component Version Inputs Outputs Description
AttributeVisualizer 1.0.1 annotation, matrix report Visualizes multidimensional attributes using a heat map together with a clustering dendrogram.
BackSPIN 1.0 in rowClusts, colClusts, permutedInput Biclustering of gene expression data using the BackSPIN algorithm.
BayesianBiclustering 1.0 input_matrix bayesian_biclustering_output Perform Bayesian Biclustering on a data matrix.
BiclustClusterer 1.0 in rowClusts, colClusts, statistics TODO.
ClusterAnnotator 1.0 data, annotations originalPlot, annotPlot, splits Produces a hierarchical clustering of the samples and assigns the provided annotations to the brances of the clustering tree.
ClusterReorder 1.0 in out Re-orders cluster ID numbers based on a given data vector.
ClusterReport 1.1 matr report, tree Performs a hierarchical clustering of samples.
FSomMetaClustering 1.0 in out, fullData Creates self-organizing maps of cytometry data with FlowSOM algorithm and meta clusters the data based on 100 fSOM-maps with consensus clustering.
GOClustering 1.1.3 goAnnotations, expr, similarityTable report, clusters Clusters genes based on their gene ontology (GO) annotations.
ISABiclust 1.0 in labels, rowClusters, colClusters Does Biclustering using iterative signature algorithm-package.
LinearBinner 1.0 in binned, cluster A very basic clustering-like method.
PhenographClusterer 1.0 in out, graph Clusters data using Phenograph clustering method.
QUBICClusterer 1.0 in rowClust, colClust Qualitative biclustering algorithm (QUBIC). https://bioconductor.org/packages/release/bioc/html/QUBIC.html.
WekaClusterer 1.0 in out Clusters data using clustering methods implemented in Weka.
XShiftClusterer 1.0 in out Clusters data using the original implementation of the X-shift algorithm.

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