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Affy

Parent category Data Import
Description AffyMetrix SNP, exon and DNA microarrays
Component Version Inputs Outputs Description
AffyNormalization 1.0 affy, sampleNames report Reads in Affymetrix gene expression microarrays and compares various normalization methods.
AffyReader 1.1.2 affy, sampleNames expr, exprRaw, groups Imports gene expression or exon array data from Affymetrix CEL-files.
AffySNPFetch 1.0 markernames, connection rsnumbers Fetches SNP rs-numbers from Ensembl based on Affy SNP-ids.
SNPArrayReader 1.7 dataDir, sampleNames genotypeMatrix, markerNames, copynumberMatrix, probeAnnotation Imports genotype data from Illumina SNP and Affymetrix SNP 6.0 or 5.0 files.

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